MAIN KEGG FILE RESULTS

	WEB-based GEne SeT AnaLysis Toolkit

	*Translating gene lists into biological insights...*

User data and parameters: User data: textAreaUpload.txt, Organism: hsapiens, Id Type: ensembl_gene_stable_id, Ref Set: entrezgene, Significance Level: Top10, Statistics Test: Hypergeometric, MTC: BH, Minimum: 2

This table lists the enriched KEGG pathways, number of Entrez IDs in your user data set for the pathway, the corresponding Entrez IDs, and the statistics for the enriched pathway.
The statistic column lists:

C: the number of reference genes in the category
O: the number of genes in the gene set and also in the category
E: the expected number in the category
R: ratio of enrichment
rawP: p value from hypergeometric test
adjP: p value adjusted by the multiple test adjustment

Finally, the pathway name is linked to KEGG where the user ids are highlighted, the number of user gene ids is linked to a table with information about the user ids, and the Entrez IDs are linked to Entrez Gene.

PathwayName	#Gene	EntrezGene	Statistics
Antigen processing and presentation	15	3108 3123 3113 3122 3117 3134 3133 3109 6890 6891 567 3111 3115 972 4261	C=76;O=15;E=0.24;R=63.52;rawP=2.62e-23;adjP=9.17e-22
Allograft rejection	10	3108 3123 3113 3122 3117 3134 3133 3109 3111 3115	C=37;O=10;E=0.11;R=86.98;rawP=1.93e-17;adjP=3.38e-16
Graft-versus-host disease	10	3108 3123 3113 3122 3117 3134 3133 3109 3111 3115	C=41;O=10;E=0.13;R=78.50;rawP=6.15e-17;adjP=7.18e-16
Type I diabetes mellitus	10	3108 3123 3113 3122 3117 3134 3133 3109 3111 3115	C=43;O=10;E=0.13;R=74.85;rawP=1.05e-16;adjP=9.19e-16
Autoimmune thyroid disease	10	3108 3123 3113 3122 3117 3134 3133 3109 3111 3115	C=52;O=10;E=0.16;R=61.89;rawP=8.43e-16;adjP=5.90e-15
Viral myocarditis	10	3108 3123 3113 3122 3117 3134 3133 3109 3111 3115	C=70;O=10;E=0.22;R=45.98;rawP=2.02e-14;adjP=1.18e-13
Asthma	8	3108 3123 3113 3122 3111 3117 3115 3109	C=30;O=8;E=0.09;R=85.82;rawP=3.88e-14;adjP=1.94e-13
Phagosome	12	3108 3123 3113 3122 3117 3134 3133 3109 6890 6891 3111 3115	C=153;O=12;E=0.48;R=25.24;rawP=7.45e-14;adjP=3.26e-13
Cell adhesion molecules (CAMs)	11	3108 3123 3113 3122 80380 3117 3134 3133 3109 3111 3115	C=133;O=11;E=0.41;R=26.62;rawP=4.69e-13;adjP=1.82e-12
Leishmaniasis	9	3108 3123 3113 3122 3117 6772 3109 3111 3115	C=72;O=9;E=0.22;R=40.23;rawP=1.48e-12;adjP=5.18e-12

WebGestalt is currently developed and maintained by Jing Wang and Bing Zhang at the Zhang Lab. Other people who have made significant contribution to the project include Dexter Duncan, Stefan Kirov, Zhiao Shi, and Jay Snoddy.

Funding credits: NIH/NIAAA (U01 AA016662, U01 AA013512); NIH/NIDA (P01 DA015027); NIH/NIMH (P50 MH078028, P50 MH096972); NIH/NCI (U24 CA159988); NIH/NIGMS (R01 GM088822).